Publications

2025

  1. bioRxiv
    Deconvolution and Phylogeny Inference of Diverse Variant Types Integrating Bulk DNA-seq with Single-cell RNA-seq
    Nishat Anjum Bristy, and Russell Schwartz
    bioRxiv, 2025
    PDF

2023

  1. RECOMB-CCB
    Sc-TUSV-ext: Single-cell clonal lineage inference from single nucleotide variants (SNV), copy number alterations (CNA) and structural variants (SV)
    Nishat Anjum Bristy, Xuecong Fu, and Russell Schwartz
    Journal of Computational Biology, 2023
    PDF

2022

  1. Bioinform. Adv.
    Genome-wide alignment-free phylogenetic distance estimation under a no strand-bias model
    Metin Balaban*, Nishat Anjum Bristy*, Ahnaf Faisal, and 2 more authors
    Bioinformatics Advances, 2022
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2019

  1. PLOS ONE
    Quartet-based inference of cell differentiation trees from chip-seq histone modification data
    Nazifa Ahmed Moumi, Badhan Das, Zarin Tasnim Promi, and 2 more authors
    Plos one, 2019
    PDF